Collection of water resources fees is of great importance to sustainable use and optimum configuration of water resources.Based on the analysis of current situation of water resources fees collection in Chongqing City,this essay disccussed the existing issues of fees collection and put forward the following suggestions on the methods of fees collection on water resources in Chongqing City:(1) To revise or release laws and regulations related to water resources fee collection and management;(2) To increase the standards of water resources fees,and adopt different collection standards for industrial water and domestic water;(3) To collect fee on geothermal water and mineral water resources.